Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015910206.1_cds_XP_016460281.1_53717
CDS Infomation

[gene=LOC107783776] [db_xref=GeneID:107783776] [protein=ATP-dependent helicase rhp16-like] [protein_id=XP_016460281.1] [location=join(4867..5248,5291..5664,6548..6670,6757..6827,7007..7067,7159..7305,7399..7484,7752..7821,8817..8936,9138..9368,9489..9593,9692..9844,9980..10068,10140..10220,10606..10684)] [gbkey=CDS]
Sequence

ATGGCGGAGAAGGCTTTATTGATGAAAAGGATAGAAGGTAGAAAAAAAGAACGTGAGAGT
AACAAAAAGAAAAGATCACCTTTGAAGTGGGAGACATGGGAAGAACAAATGGATAAGTGG
CTTACAAAAAATTATTCAAGAGATGTAGACTTAGGTAATACTCAGAACGTGTTGGTTCCA
GCTGAAACAGCCGAGCCACCATCCGATTTTATATTGCCACTGCTAAGGTACCAAAAGGAG
TGGTTGGCTTGGTCATTAAAGCAAGAAGAATCTGTAGCAAGAGGAGGTATTCTTGCTGAT
GAAATGGGAATGGGGAAGACTGTTCAAGCCATAGCACTTGTGCTTGCTCAACGCGAATTA
CAGAAATCAAATAGTAATTCCACAGTCAAAGGAACTCTAGTTGTATGTCCTGTGATTGCA
GGAATCCAATGGTTTAGCGAGATTGAACGTTGCACCACTAAAGGAAGCAACAGAATTCTT
GTTTATCATGGCACCGACAGGGAGAAACATATGCACAAATTGGCGGAATATGATTTTGTT
ATTACTACCTACTCCACCATTGAGGTTGACTATAGGAAGTATATGACACCATCAAAGGAG
CTGAGTAAGAACTTAGAACCTCGGGTAGAAGTGTTGGACCAGAAAACAGGTTCTACAGAA
AATTTGAGCAACAGTGGTTCTATTGATAATTCAGCTGTGTCCAGGAGGAAGTCAGCTTTG
CATTCAGTGAAGTGGGACCGCATCATTTTGGATGAGGCACATTATGTGAAAAATTCACGC
TGCAAAACCTCAAGAGCTGTTTTTGCGTTAGAATCTTCTTATAAGTGGGCCTTAACTGGT
ACACCCCTGCAAAATCGTATAGGAGAATTGTACTCATTTGTTCGTTTCCTACAAGCTCCT
TACGCTTATTACTTTTGCAAAGATTGTGATTGCACAGAACTTGATTATAGCTTCGCTGAG
TGCCCACAGTGCCACCACAACTGCGCACGCCACTTTCTCTGGTGGAATAGATATATTAAA
AAACCTTTACAAGAAAATCCAAACAAAGGGGCTGGTAAAGATGCGATGCTTTTATTGAAG
CACAATATTCTGAAAAAGCTATTGCTAAGACGTACCAAAAAGGAAAGAGCTGCTGAGTTA
GCACTTCCCATGAAGACTGTTACTCTGAGAAAAGATTCTTTGAATGACGAAGAACGCGAC
TTCTACATGTCATTTCACAATGAAAGCAAGACACAGTTCGATACATATGTTAGGGTGGGA
ACTCTAACGAATAACTATGCTCACGTTTTTGCTATAATCACACGCCTACGGCAGGCAGTT
GATCACCCTTACCTTGTGGTATGCTCTAGCACAGATTTGACTAGTGTGAATAAAGATGCT
GGAGATGTTGAAAAATCGTGTAGCTTATGTAAAGATACGGTGGAAGATCCAATAGTTACT
TCTTGCACACACGTGTTTTGCAAGACGTGTTTGATAAACTTTGCTGAAAGTAGGGGAAAA
CCGGCATGCCCTTCATGTGATAAACCCCTTACATTTGACTCCAATGCAAATAATGATAAG
GGGGATTCTAGTTCTAAGCCTACTGTCAAAGGGTTTAGGTCCTCAAGTATATCGAACAAA
ATTCAGCGCGATGGATTCCAGACAAGCACTAAAATAGAAGCTTTGAGGGAAGAAATTAGG
TTCATGGTTGAAAGAGACGGTTCTGCAAAAGGAATAGTTTTCAGCCAGTTCACATCGTTT
TTGGATCTAATACAGTACTCTCTTCAGAAATCGGGCGTCAATTGTGTTCAATTAGTTGGA
TCCATGTCTATGGCTGAAAGAAATGCTGCAGTTACCACATTTACTGAAGATCCAAAATGC
AGGATACTTCTTATGAGCTTGAAAGCTGGAGGTGTTGCCCTCAATCTTACAGTTGCATCA
CATGTTTTCTTGATGGATCCTTGGTGGAATCCTGCGGTGGAGTGGCAAGCACAAGATAGA
ATCCATCGAATAGGGCAACATAAACCAGTCAGGATTGTGAGATTCGTAATTGAGGATACA
ATTGAAGAAAGGATCTTAGAGTTACAAGAGAAGAGGAAACTATTTTTTGAAGGGACTGTC
GGTGGTTCTTCAGATGCCTTGGGAAAGCTAACAAAGTCAGACTTGGATTTCCTGTTTTAT
CGTCACTTTTAA

Peptide Sequence

PEP ID

XP_016460281.1
PEP Infomation

PREDICTED: ATP-dependent helicase rhp16-like [Nicotiana tabacum]
Sequence

MAEKALLMKRIEGRKKERESNKKKRSPLKWETWEEQMDKWLTKNYSRDVDLGNTQNVLVP
AETAEPPSDFILPLLRYQKEWLAWSLKQEESVARGGILADEMGMGKTVQAIALVLAQREL
QKSNSNSTVKGTLVVCPVIAGIQWFSEIERCTTKGSNRILVYHGTDREKHMHKLAEYDFV
ITTYSTIEVDYRKYMTPSKELSKNLEPRVEVLDQKTGSTENLSNSGSIDNSAVSRRKSAL
HSVKWDRIILDEAHYVKNSRCKTSRAVFALESSYKWALTGTPLQNRIGELYSFVRFLQAP
YAYYFCKDCDCTELDYSFAECPQCHHNCARHFLWWNRYIKKPLQENPNKGAGKDAMLLLK
HNILKKLLLRRTKKERAAELALPMKTVTLRKDSLNDEERDFYMSFHNESKTQFDTYVRVG
TLTNNYAHVFAIITRLRQAVDHPYLVVCSSTDLTSVNKDAGDVEKSCSLCKDTVEDPIVT
SCTHVFCKTCLINFAESRGKPACPSCDKPLTFDSNANNDKGDSSSKPTVKGFRSSSISNK
IQRDGFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLIQYSLQKSGVNCVQLVG
SMSMAERNAAVTTFTEDPKCRILLMSLKAGGVALNLTVASHVFLMDPWWNPAVEWQAQDR
IHRIGQHKPVRIVRFVIEDTIEERILELQEKRKLFFEGTVGGSSDALGKLTKSDLDFLFY
RHF

Transcript Sequence

Gene sequence data has not been registered.